40 lines
1 KiB
Bash
40 lines
1 KiB
Bash
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# Copyright 1999-2012 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/recon/recon-1.06-r2.ebuild,v 1.1 2012/08/26 13:01:44 jlec Exp $
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EAPI="4"
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inherit eutils toolchain-funcs
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DESCRIPTION="Automated de novo identification of repeat families from genomic sequences"
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HOMEPAGE="http://selab.janelia.org/recon.html http://www.repeatmasker.org/RepeatModeler.html"
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SRC_URI="http://www.repeatmasker.org/RECON${PV}.tar.gz"
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LICENSE="GPL-2"
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SLOT="0"
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IUSE="examples"
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KEYWORDS="~amd64 ~x86"
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S="${WORKDIR}/RECON${PV}"
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src_prepare() {
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epatch \
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"${FILESDIR}"/${PV}-buffer-overflow.patch \
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"${FILESDIR}"/${P}-respect.patch
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sed -i 's|$path = "";|$path = "/usr/libexec/'${PN}'";|' scripts/recon.pl || die
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tc-export CC
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}
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src_compile() {
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emake -C src
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}
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src_install() {
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dobin scripts/*
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exeinto /usr/libexec/${PN}
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doexe src/{edgeredef,eledef,eleredef,famdef,imagespread}
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dodoc 00README
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insinto /usr/share/${PN}
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use examples && doins -r Demos
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}
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