2016-09-05 00:53:04 +03:00
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DEFINED_PHASES=configure install postinst prepare setup
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2017-03-26 12:26:27 +03:00
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DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 >=app-portage/elt-patches-20170317 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
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2016-09-05 00:53:04 +03:00
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DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2
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EAPI=6
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HOMEPAGE=https://ccb.jhu.edu/software/tophat/
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IUSE=debug python_targets_python2_7
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KEYWORDS=~amd64 ~x86
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LICENSE=Artistic
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2017-02-21 09:07:27 +03:00
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RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2
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2016-09-05 00:53:04 +03:00
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REQUIRED_USE=python_targets_python2_7
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SLOT=0
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SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz
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2017-03-26 12:26:27 +03:00
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_eclasses_=autotools 7027963e8e8cc12c91117bdb9225dc26 epatch 8233751dc5105a6ae8fcd86ce2bb0247 epunt-cxx f8073339d152f56626493f43d8ba4691 estack 5ac2a138d0b33354b764d84f9e835db8 eutils e7491451996e8b54c3caeb713285b0fb flag-o-matic 61cad4fb5d800b29d484b27cb033f59b libtool e32ea84bf82cf8987965b574672dba93 ltprune 2770eed66a9b8ef944714cd0e968182e multilib 0236be304ee52e7f179ed2f337075515 python-single-r1 c3e54dd0dc1e70c6252f2551a55bf053 python-utils-r1 a166d0f5815d7f1e67bb60a196f1bf7e toolchain-funcs 6eb35f81556258a4bc9182ad3dfd58ee
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2017-03-01 14:58:55 +03:00
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_md5_=67bcf40eef080ccf999e7cb3db1347e1
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