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# Copyright 1999-2021 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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inherit cmake
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DESCRIPTION="Streaming RNA-Seq Analysis"
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HOMEPAGE="https://pachterlab.github.io/eXpress/"
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SRC_URI="https://pachterlab.github.io/eXpress/downloads/${P}/${P}-src.tgz"
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LICENSE="Artistic"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE=""
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DEPEND="
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>=dev-libs/boost-1.52.0:=
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dev-libs/protobuf
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dev-util/google-perftools
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sci-biology/bamtools
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sys-libs/zlib
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"
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RDEPEND="${DEPEND}"
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S="${WORKDIR}/${P}-src"
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PATCHES=(
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"${FILESDIR}"/${P}-buildsystem.patch
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"${FILESDIR}"/${P}-gcc6.patch
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)
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src_configure() {
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local mycmakeargs=(
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-DBAMTOOLS_INCLUDE="${EPREFIX}/usr/include/bamtools"
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)
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cmake_src_configure
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}
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