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# Copyright 1999-2021 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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inherit flag-o-matic fortran-2 toolchain-funcs
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DESCRIPTION="A suite of algorithms for ecological bioinformatics"
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HOMEPAGE="https://www.mothur.org/"
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SRC_URI="https://www.mothur.org/w/images/c/cb/Mothur.${PV}.zip -> ${P}.zip"
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S="${WORKDIR}/${PN^}.source"
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LICENSE="GPL-3"
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SLOT="0"
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KEYWORDS="amd64 x86"
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IUSE="mpi +readline"
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RDEPEND="
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sci-biology/uchime
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mpi? ( virtual/mpi )"
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DEPEND="${RDEPEND}"
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BDEPEND="app-arch/unzip"
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PATCHES=(
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"${FILESDIR}"/${P}-makefile.patch
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"${FILESDIR}"/${P}-overflows.patch
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)
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src_configure() {
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use mpi && export CXX=mpicxx || tc-export CXX
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use amd64 && append-cppflags -DBIT_VERSION
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}
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src_compile() {
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emake \
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USEMPI=$(usex mpi) \
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USEREADLINE=$(usex readline)
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}
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src_install() {
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dobin mothur
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}
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