48 lines
1.3 KiB
Bash
48 lines
1.3 KiB
Bash
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# Copyright 1999-2011 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/samtools/samtools-0.1.12a-r1.ebuild,v 1.3 2011/07/18 01:50:51 jlec Exp $
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EAPI=2
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inherit toolchain-funcs multilib
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DESCRIPTION="Utilities for SAM (Sequence Alignment/Map), a format for large nucleotide sequence alignments"
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HOMEPAGE="http://samtools.sourceforge.net/"
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SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2"
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LICENSE="MIT"
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SLOT="0"
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IUSE="examples"
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KEYWORDS="~amd64 ~x86 ~x64-macos"
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src_prepare() {
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sed \
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-e '/^CFLAGS=/d' \
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-e "s/\$(CC) \$(CFLAGS)/& \$(LDFLAGS)/g" \
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-e "s/-shared/& \$(LDFLAGS)/" \
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-i "${S}"/{Makefile,misc/Makefile} || die #358563
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sed -i 's~/software/bin/python~/usr/bin/env python~' "${S}"/misc/varfilter.py || die
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}
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src_compile() {
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emake CC="$(tc-getCC)" dylib || die
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emake CC="$(tc-getCC)" || die
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}
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src_install() {
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dobin samtools || die
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dobin $(find misc -type f -executable) || die
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dolib.so libbam.so.1 || die
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dosym libbam.so.1 /usr/$(get_libdir)/libbam.so || die
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insinto /usr/include/bam
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doins bam.h bgzf.h faidx.h kaln.h khash.h kprobaln.h kseq.h ksort.h sam.h || die
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doman ${PN}.1 || die
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dodoc AUTHORS ChangeLog NEWS
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if use examples; then
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insinto /usr/share/${PN}
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doins -r examples || die
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fi
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}
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