DEFINED_PHASES=compile configure install prepare test
DEPEND=dev-libs/boost bam? ( sci-biology/samtools ) || ( >=sys-devel/automake-1.11.1:1.11 >=sys-devel/automake-1.12:1.12 ) >=sys-devel/autoconf-2.68 sys-devel/libtool
DESCRIPTION=A fast splice junction mapper for RNA-Seq reads
EAPI=4
HOMEPAGE=http://tophat.cbcb.umd.edu/
IUSE=+bam debug
KEYWORDS=~amd64 ~x86
LICENSE=Artistic
RDEPEND=dev-libs/boost bam? ( sci-biology/samtools ) sci-biology/bowtie
SLOT=0
SRC_URI=http://tophat.cbcb.umd.edu/downloads/tophat-2.0.0.tar.gz
_eclasses_=autotools	d89996a2048bc6d1ae72bfa4c04517fe	autotools-utils	cfb1126efe81254030227216aa71f32c	eutils	f98a70ed99fbfc479df6694dc8af82ac	libtool	a83de71c2123161fc5a8323cb275f8e5	multilib	c2b85b5c63a44798c1e442147ac14c5c	multiprocessing	a2130e6fc4aa4c6a24b265ca0cbcc2b6	toolchain-funcs	d3b5812eeab360bc41aa48b6cdbbc142	user	d0a4d0735a6c0183d707ca919bd72f28
_md5_=a3df878309c9dce16ef49799ba0d8b43