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52 lines
1.0 KiB
52 lines
1.0 KiB
# Copyright 1999-2023 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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DOCS_BUILDER="doxygen"
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DOCS_CONFIG_NAME="doxygen.conf"
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inherit docs toolchain-funcs
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DESCRIPTION="Eukaryotic gene predictor"
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HOMEPAGE="https://bioinf.uni-greifswald.de/augustus/"
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SRC_URI="https://github.com/Gaius-Augustus/Augustus/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
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S="${WORKDIR}/${P^}"
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LICENSE="Artistic"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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RDEPEND="
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dev-db/sqlite:3
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dev-db/mysql++:=
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dev-db/mysql-connector-c:=
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dev-libs/boost:=[zlib]
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sci-biology/bamtools:=
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sci-biology/samtools:0
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sci-libs/gsl:=
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sci-libs/htslib:=
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sci-libs/suitesparse
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sci-mathematics/lpsolve:=
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sys-libs/zlib
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"
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DEPEND="${RDEPEND}"
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src_compile() {
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tc-export CC CXX
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emake LINK.cc="$(tc-getCXX)"
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docs_compile
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}
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src_install() {
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einstalldocs
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# from upstream Makefile install:
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dodir "opt/${P}"
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cp -a config bin scripts "${ED}/opt/${P}" || die
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local file
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for file in bin/*; do
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dosym "../${P}/${file}" "/opt/${file}"
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done
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}
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