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48 lines
1.0 KiB
48 lines
1.0 KiB
# Copyright 1999-2024 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit toolchain-funcs
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MY_P=GlimmerHMM
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DESCRIPTION="A eukaryotic gene finding system from TIGR"
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HOMEPAGE="http://www.cbcb.umd.edu/software/GlimmerHMM/"
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SRC_URI="https://ccb.jhu.edu/software/glimmerhmm/dl/${MY_P}-${PV}.tar.gz"
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S="${WORKDIR}/${MY_P}"
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LICENSE="Artistic"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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PATCHES=(
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"${FILESDIR}"/${PV}-gentoo.patch
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"${FILESDIR}"/${PN}-3.0.1-fix-data-path.patch
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"${FILESDIR}"/0001-fix-ridiculous-ODR-violation.patch
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)
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src_configure() {
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tc-export CC CXX
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}
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src_compile() {
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emake -C sources
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emake -C train
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}
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src_install() {
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dobin sources/glimmerhmm train/trainGlimmerHMM
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insinto /usr/share/${PN}/lib
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doins train/*.pm
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insinto /usr/share/${PN}/models
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doins -r trained_dir/.
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exeinto /usr/libexec/${PN}/training_utils
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doexe train/{build{1,2,-icm,-icm-noframe},erfapp,falsecomp,findsites,karlin,score,score{2,ATG,ATG2,STOP,STOP2},splicescore}
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dodoc README.first train/readme.train
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}
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