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56 lines
1.1 KiB
56 lines
1.1 KiB
# Copyright 1999-2022 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit toolchain-funcs
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MY_PV="${PV/_beta/b}"
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DESCRIPTION="Sequence analysis using profile hidden Markov models"
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HOMEPAGE="http://hmmer.org/"
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SRC_URI="http://eddylab.org/software/${PN}3/${MY_PV}/hmmer-${MY_PV}.tar.gz"
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S="${WORKDIR}/${PN}-${MY_PV}"
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LICENSE="GPL-3"
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SLOT="0"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
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IUSE="cpu_flags_ppc_altivec cpu_flags_x86_sse gsl mpi test"
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RESTRICT="!test? ( test )"
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RDEPEND="
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mpi? ( virtual/mpi )
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gsl? ( sci-libs/gsl:= )"
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DEPEND="${RDEPEND}"
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BDEPEND="test? ( dev-lang/perl )"
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PATCHES=(
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"${FILESDIR}"/${PN}-3.1_beta2-fix-perl-shebangs.patch
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"${FILESDIR}"/${PN}-3.1_beta2-makefile.patch
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)
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src_configure() {
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# make build verbose, bug #429308
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export V=1
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econf \
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--disable-pic \
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--enable-threads \
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$(use_enable cpu_flags_ppc_altivec vmx) \
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$(use_enable cpu_flags_x86_sse sse) \
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$(use_enable mpi) \
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$(use_with gsl)
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}
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src_compile() {
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emake AR="$(tc-getAR)"
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}
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src_install() {
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default
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dodoc Userguide.pdf
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insinto /usr/share/hmmer
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doins -r tutorial
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}
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