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53 lines
1.1 KiB
53 lines
1.1 KiB
--- a/src/KmerIndex.cpp
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+++ b/src/KmerIndex.cpp
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@@ -4,7 +4,7 @@
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#include <ctype.h>
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#include <zlib.h>
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#include <unordered_set>
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-#include "kseq.h"
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+#include <htslib/kseq.h>
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#ifndef KSEQ_INIT_READY
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#define KSEQ_INIT_READY
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--- a/src/ProcessReads.cpp
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+++ b/src/ProcessReads.cpp
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@@ -1,6 +1,6 @@
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/*
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#include <zlib.h>
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-#include "kseq.h"
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+#include <htslib/kseq.h>
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#include <string>
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#include <vector>
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#include <unordered_map>
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@@ -20,7 +20,7 @@
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#include <iomanip>
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#include "ProcessReads.h"
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-#include "kseq.h"
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+#include <htslib/kseq.h>
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#include "PseudoBam.h"
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#include "Fusion.hpp"
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#include "BUSData.h"
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--- a/src/ProcessReads.h
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+++ b/src/ProcessReads.h
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@@ -2,7 +2,7 @@
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#define KALLISTO_PROCESSREADS_H
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#include <zlib.h>
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-#include "kseq.h"
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+#include <htslib/kseq.h>
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#include <string>
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#include <vector>
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#include <unordered_map>
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--- a/unit_tests/test_kmerhashtable.cpp
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+++ b/unit_tests/test_kmerhashtable.cpp
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@@ -13,7 +13,7 @@
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#include "KmerHashTable.h"
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#include <zlib.h>
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-#include "kseq.h"
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+#include <htslib/kseq.h>
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#ifndef KSEQ_INIT_READY
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#define KSEQ_INIT_READY
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