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43 lines
853 B
43 lines
853 B
# Copyright 1999-2024 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit autotools
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DESCRIPTION="Mapping and Assembly with Qualities, mapping NGS reads to reference genomes"
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HOMEPAGE="https://maq.sourceforge.net/"
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SRC_URI="
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https://downloads.sourceforge.net/${PN}/${P}.tar.bz2
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https://downloads.sourceforge.net/${PN}/calib-36.dat.gz"
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LICENSE="GPL-3"
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SLOT="0"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
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RDEPEND="sys-libs/zlib"
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DEPEND="${RDEPEND}"
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PATCHES=(
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"${FILESDIR}"/${P}-flags.patch
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"${FILESDIR}"/${P}-bfr-overfl.patch
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"${FILESDIR}"/${P}-gcc-4.7.patch
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"${FILESDIR}"/${P}-remove-64bit-flag.patch
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"${FILESDIR}"/${P}-gcc14-build-fix.patch
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)
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src_prepare() {
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default
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eautoreconf
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}
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src_install() {
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default
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insinto /usr/share/maq
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doins "${WORKDIR}"/*.dat
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doman maq.1
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dodoc maq.pdf
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}
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