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51 lines
1.1 KiB
51 lines
1.1 KiB
# Copyright 1999-2022 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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inherit flag-o-matic toolchain-funcs vcs-snapshot
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DESCRIPTION="A reference-guided aligner for next-generation sequencing technologies"
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HOMEPAGE="https://github.com/wanpinglee/MOSAIK"
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SRC_URI="https://github.com/wanpinglee/MOSAIK/archive/5c25216d3522d6a33e53875cd76a6d65001e4e67.tar.gz -> ${P}.tar.gz"
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S="${WORKDIR}/${P}/src"
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LICENSE="GPL-2"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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PATCHES=(
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"${FILESDIR}"/${P}-remove-platform-code.patch
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"${FILESDIR}"/${P}-fix-build-system.patch
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"${FILESDIR}"/${P}-Wformat-security.patch
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"${FILESDIR}"/${P}-gcc7.patch
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"${FILESDIR}"/${P}-gcc11.patch
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"${FILESDIR}"/${P}-gcc12-time.patch
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)
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src_configure() {
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# readd default warning flags from build system
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append-flags -Wall -Wno-char-subscripts
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append-lfs-flags
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export BLD_PLATFORM=linux
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}
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src_compile() {
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emake \
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CC="$(tc-getCC)" \
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CXX="$(tc-getCXX)" \
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CFLAGS="${CFLAGS}" \
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CXXFLAGS="${CXXFLAGS}" \
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CPPFLAGS="${CPPFLAGS}" \
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LDFLAGS="${LDFLAGS}"
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}
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src_install() {
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dobin bin/Mosaik*
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dodoc ../README
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insinto /usr/share/${PN}/examples
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doins -r ../demo/.
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}
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