You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
46 lines
1.5 KiB
46 lines
1.5 KiB
# Copyright 1999-2021 Gentoo Authors
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
|
|
EAPI=8
|
|
|
|
DESCRIPTION="Bayesian Inference of Phylogeny"
|
|
HOMEPAGE="https://nbisweden.github.io/MrBayes/"
|
|
SRC_URI="https://github.com/NBISweden/MrBayes/releases/download/v${PV}/${P}.tar.gz"
|
|
|
|
LICENSE="GPL-2"
|
|
SLOT="0"
|
|
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos"
|
|
IUSE="debug mpi readline"
|
|
# --with-readline was given, but MPI support requires readline to be disabled.
|
|
REQUIRED_USE="mpi? ( !readline )"
|
|
|
|
DEPEND="
|
|
sys-libs/ncurses:=
|
|
mpi? ( virtual/mpi )
|
|
readline? ( sys-libs/readline:= )
|
|
"
|
|
RDEPEND="${DEPEND}"
|
|
|
|
src_configure() {
|
|
econf \
|
|
"$(use_with mpi)" \
|
|
"$(use_with readline)" \
|
|
"$(use_enable debug )" \
|
|
# configure checks cpuid and enables fma{3,4}, sse{1..4} if detected.
|
|
# Configure options only allow disabling the auto-detection, but do not
|
|
# actually allow toggling the individual cpu instruction sets. The only
|
|
# way to guarantee that cross-compiling and binpkgs will work on machines
|
|
# other than the host is to unconditionally disable sse/fma/avx.
|
|
#"$(use_enable cpu_flags_x86_sse sse )" \
|
|
#"$(use_enable cpu_flags_x86_avx avx )" \
|
|
#"$(use_enable cpu_flags_x86_fma3 fma )" \
|
|
# Has optional support for sci-biology/beagle::science
|
|
# "$(use_with beagle)"
|
|
}
|
|
|
|
src_compile() {
|
|
# The --disable options for the cpu instruction sets don't actually work so
|
|
# we override it here and also set the user specified CFLAGS.
|
|
emake SIMD_FLAGS= CPUEXT_FLAGS= CFLAGS="${CFLAGS}"
|
|
}
|