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63 lines
1.5 KiB
63 lines
1.5 KiB
https://bugs.gentoo.org/874477
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--- a/eufind_main.c
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+++ b/eufind_main.c
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@@ -23,4 +23,5 @@
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#include <stdlib.h>
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#include <string.h>
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+#include <unistd.h>
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#include "squid.h"
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#include "sqfuncs.h"
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@@ -47,4 +48,14 @@
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-i <integer> : start nucleotide numbering at <integer> (def=1)\n\n";
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+int GetBbox(float*, int*, char*, int, int, int);
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+int GetBestABox(TRNA_TYPE*, char*, char*, int, int, int, int, int);
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+int GetBestTrxTerm(TRNA_TYPE*, char*, int, float);
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+int GetSecABox(TRNA_TYPE*, char*);
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+void Get_tRNA_stats(TRNA_TYPE*, char*, int, int);
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+int Init_tRNA(TRNA_TYPE*);
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+int IntEncodeSeq(char*, char*, int);
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+void Save_tRNA(TRNA_TYPE*, SQINFO*, char*, int, int, long int);
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+int tRNAOverlap(TRNA_TYPE*, TRNA_TYPE*, int);
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+
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int
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main (int argc, char **argv)
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--- a/scan_main.c
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+++ b/scan_main.c
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@@ -8,4 +8,5 @@
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#include <stdlib.h>
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#include <string.h>
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+#include <unistd.h>
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#include <time.h>
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#include <math.h>
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--- a/score_main.c
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+++ b/score_main.c
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@@ -10,4 +10,5 @@
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#include <stdlib.h>
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#include <string.h>
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+#include <unistd.h>
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#include <time.h>
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#include <math.h>
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--- a/trnascan.c
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+++ b/trnascan.c
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@@ -69,4 +69,5 @@
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#include <stdio.h>
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#include <stdlib.h>
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+#include <unistd.h>
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#include <ctype.h>
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@@ -333,5 +334,5 @@
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);
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-main(int argc, char **argv)
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+int main(int argc, char **argv)
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{
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/* pointers to the different files fpi=input file, fpo=output file,
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@@ -1419,5 +1420,5 @@
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/* Calls to this function eliminated for efficiency T. Lowe 11/95 */
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-myindex (char *s, char *t)
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+int myindex (char *s, char *t)
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{
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int i, j, k;
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