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46 lines
1.0 KiB
46 lines
1.0 KiB
# Copyright 1999-2022 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit flag-o-matic perl-functions toolchain-funcs
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DESCRIPTION="tRNA detection in large-scale genome sequences"
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HOMEPAGE="http://lowelab.ucsc.edu/tRNAscan-SE/"
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SRC_URI="http://lowelab.ucsc.edu/software/tRNAscan-SE.tar.gz -> ${P}.tar.gz"
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S="${WORKDIR}"/tRNAscan-SE-1.3.1/
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LICENSE="GPL-2"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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RDEPEND="dev-lang/perl:="
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BDEPEND="${RDEPEND}"
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PATCHES=(
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"${FILESDIR}"/${P}-makefile.patch
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"${FILESDIR}"/${P}-portable-perl-shebangs.patch
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"${FILESDIR}"/${P}-clang16.patch
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)
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src_configure() {
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tc-export CC
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append-cflags -std=gnu89 # mid-migration from K&R C, incompatible with c2x
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}
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src_test() {
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emake PATH="${S}:${PATH}" testrun
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}
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src_install() {
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dobin covels-SE coves-SE eufindtRNA tRNAscan-SE trnascan-1.4
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newman tRNAscan-SE.man tRNAscan-SE.man.1
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dodoc MANUAL Manual.ps README Release.history
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insinto /usr/share/trnascan-se
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doins *.cm gcode.* Dsignal TPCsignal
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perl_domodule -r tRNAscanSE
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}
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