55 lines
1.6 KiB
Bash
55 lines
1.6 KiB
Bash
# Copyright 1999-2017 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=6
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PYTHON_COMPAT=( python2_7 python3_{4,5} pypy )
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inherit distutils-r1 eutils
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DESCRIPTION="Python modules for computational molecular biology"
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HOMEPAGE="http://www.biopython.org/ https://pypi.python.org/pypi/biopython/"
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SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
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LICENSE="HPND"
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SLOT="0"
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KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
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IUSE=""
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RDEPEND="
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dev-python/matplotlib[$(python_gen_usedep 'python*')]
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dev-python/networkx[$(python_gen_usedep 'python*')]
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dev-python/numpy[$(python_gen_usedep 'python*')]
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dev-python/rdflib[$(python_gen_usedep 'python*')]
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dev-python/pygraphviz[$(python_gen_usedep 'python2*')]
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dev-python/reportlab[$(python_gen_usedep 'python*')]
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media-gfx/pydot[$(python_gen_usedep 'python2*')]
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"
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DEPEND="${RDEPEND}
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sys-devel/flex"
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DOCS=( CONTRIB DEPRECATED NEWS README Doc/. )
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python_test() {
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distutils_install_for_testing
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cp -r "${S}"/{Doc,Tests} "${TEST_DIR}"/lib/ || die
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cd "${TEST_DIR}"/lib/Tests || die
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rm test_BioSQL_{psycopg2.py,MySQLdb.py,mysql_connector.py} || die
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${PYTHON} run_tests.py --offline --verbose || die
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}
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python_install_all() {
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distutils-r1_python_install_all
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dodir /usr/share/${PN}
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cp -r --preserve=mode Scripts Tests "${ED%/}"/usr/share/${PN} || die
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}
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pkg_postinst() {
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elog "For database support you need to install:"
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optfeature "MySQL" dev-python/mysql-python
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optfeature "PostGreSQL" dev-python/psycopg
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elog
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elog "Some applications need extra packages:"
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optfeature "EMBOSS (The European Molecular Biology Open Software Suite)" sci-biology/emboss
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}
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