31 lines
745 B
Bash
31 lines
745 B
Bash
# Copyright 1999-2012 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/tophat/tophat-2.0.2.ebuild,v 1.1 2012/07/19 12:03:38 jlec Exp $
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EAPI=4
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AUTOTOOLS_AUTORECONF=yes
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inherit autotools-utils
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DESCRIPTION="A fast splice junction mapper for RNA-Seq reads"
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HOMEPAGE="http://tophat.cbcb.umd.edu/"
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SRC_URI="http://tophat.cbcb.umd.edu/downloads/${P}.tar.gz"
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LICENSE="Artistic"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE="+bam debug"
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DEPEND="
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dev-libs/boost
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bam? ( sci-biology/samtools )"
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RDEPEND="${DEPEND}
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sci-biology/bowtie"
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PATCHES=( "${FILESDIR}"/${P}-flags.patch )
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src_configure() {
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local myeconfargs=( $(use_enable debug) )
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autotools-utils_src_configure
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}
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