47 lines
983 B
Bash
47 lines
983 B
Bash
# Copyright 1999-2015 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=5
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inherit toolchain-funcs versionator
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MY_P=$(version_format_string '${PN}$1$2')
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DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood"
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HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html"
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SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz"
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LICENSE="free-noncomm"
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SLOT="0"
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KEYWORDS="amd64 x86"
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IUSE=""
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S=${WORKDIR}/${MY_P}
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src_prepare() {
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# Notice send by mail to prof. Ziheng Yang
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sed -i "s/\$(CC)/& \$(LDFLAGS)/" src/Makefile || die #335608
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}
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src_compile() {
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emake -C src \
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CC="$(tc-getCC)" \
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CFLAGS="${CFLAGS} -Wno-unused-result" \
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LDFLAGS="${LDFLAGS}"
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}
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src_install() {
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dodoc README.txt doc/*
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insinto /usr/share/${PN}/control
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doins *.ctl
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insinto /usr/share/${PN}/dat
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doins stewart* *.dat dat/*
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insinto /usr/share/${PN}
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doins -r examples/
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cd src || die
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dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2
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}
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