37 lines
965 B
Bash
37 lines
965 B
Bash
# Copyright 1999-2012 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
# $Header: /var/cvsroot/gentoo-x86/sci-biology/abyss/abyss-1.3.3.ebuild,v 1.2 2012/06/20 20:48:56 jlec Exp $
|
|
|
|
EAPI="4"
|
|
|
|
inherit autotools eutils
|
|
|
|
DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
|
|
HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
|
|
SRC_URI="http://www.bcgsc.ca/downloads/abyss/${P}.tar.gz"
|
|
|
|
LICENSE="abyss"
|
|
SLOT="0"
|
|
IUSE="+mpi openmp"
|
|
KEYWORDS="~amd64 ~x86"
|
|
|
|
DEPEND="
|
|
dev-cpp/sparsehash
|
|
mpi? ( virtual/mpi )"
|
|
RDEPEND="${DEPEND}"
|
|
|
|
# todo: --enable-maxk=N configure option
|
|
# todo: fix automagic mpi toggling
|
|
|
|
src_prepare() {
|
|
epatch "${FILESDIR}"/${P}-gcc-4.7.patch
|
|
sed -i -e "s/-Werror//" configure.ac || die #365195
|
|
sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
|
|
eautoreconf
|
|
}
|
|
|
|
src_configure() {
|
|
econf \
|
|
--docdir="${EPREFIX}/usr/share/doc/${PF}" \
|
|
$(use_enable openmp)
|
|
}
|