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43 lines
1.0 KiB
43 lines
1.0 KiB
# Copyright 1999-2013 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-45166.ebuild,v 1.2 2013/11/12 17:44:27 jlec Exp $
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EAPI=5
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AUTOTOOLS_AUTORECONF=yes
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inherit autotools-utils
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DESCRIPTION="A variant ascertainment algorithm that can be used to detect SNPs, indels, and other polymorphisms"
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HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/"
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SRC_URI="
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ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/${P}.tar.gz
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ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc"
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LICENSE="Whitehead-MIT"
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SLOT="0"
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KEYWORDS="~amd64"
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IUSE="openmp"
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DEPEND=">=dev-libs/boost-1.41.0-r3"
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RDEPEND="${DEPEND}"
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DOCS=( "${DISTDIR}/VAAL_manual.doc" )
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src_prepare() {
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sed \
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-e '/COPYING/d' \
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-i src/Makefile.am || die
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sed \
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-e 's:-ggdb::g' \
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-e '/AC_OPENMP_CEHCK/d' \
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-i configure.ac || die
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autotools-utils_src_prepare
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}
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src_configure(){
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local myeconfargs=( $(use_enable openmp) )
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autotools-utils_src_configure
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}
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