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53 lines
1022 B
53 lines
1022 B
# Copyright 1999-2022 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit toolchain-funcs
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DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays"
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HOMEPAGE="https://github.com/alexdobin/STAR"
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SRC_URI="https://github.com/alexdobin/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
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LICENSE="GPL-3"
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SLOT="0"
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KEYWORDS="~amd64"
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RDEPEND="sci-libs/htslib:="
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DEPEND="${RDEPEND}"
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BDEPEND="virtual/pkgconfig"
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PATCHES=(
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"${FILESDIR}"/${PN}-2.7.10a-fix-build-system.patch
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"${FILESDIR}"/${PN}-2.7.10a-missing-include.patch
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)
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DOCS=( README.md CHANGES.md RELEASEnotes.md doc/STARmanual.pdf )
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pkg_pretend() {
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[[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
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}
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pkg_setup() {
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[[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
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}
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src_prepare() {
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default
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# remove bundled htslib
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rm -r source/htslib || die
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}
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src_configure() {
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tc-export CC CXX PKG_CONFIG
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}
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src_compile() {
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emake -C source STAR
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}
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src_install() {
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dobin source/STAR
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einstalldocs
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}
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