33 lines
928 B
Bash
33 lines
928 B
Bash
# Copyright 1999-2012 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.330.0.ebuild,v 1.1 2012/02/29 08:57:25 robbat2 Exp $
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EAPI=4
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MODULE_AUTHOR=LDS
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MODULE_VERSION=1.33
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inherit perl-module
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DESCRIPTION="Read SAM/BAM database files"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE=""
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RDEPEND="sci-biology/bioperl
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>=sci-biology/samtools-0.1.16"
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DEPEND="${RDEPEND}
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virtual/perl-ExtUtils-CBuilder
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virtual/perl-Module-Build
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"
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SRC_TEST=do
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src_prepare() {
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sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \
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-e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die
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sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \
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-e 's|#include "khash.h"|#include "bam/khash.h"|' \
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-e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die
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perl-module_src_prepare
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}
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