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56 lines
1.2 KiB
56 lines
1.2 KiB
# Copyright 1999-2018 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=5
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inherit eutils prefix toolchain-funcs versionator
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#MY_P="${PN}$(delete_all_version_separators)"
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MY_P="${PN}${PV}"
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DESCRIPTION="Protein Secondary Structure Prediction"
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HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/"
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SRC_URI="
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http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz
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test? ( http://bioinfadmin.cs.ucl.ac.uk/downloads/psipred/old/data/tdbdata.tar.gz )"
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LICENSE="psipred"
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SLOT="0"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
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IUSE="test"
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RDEPEND="
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app-shells/tcsh
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sci-biology/ncbi-tools
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sci-biology/update-blastdb"
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DEPEND=""
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S="${WORKDIR}"/${PN}
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src_prepare() {
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rm -f bin/*
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epatch \
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"${FILESDIR}"/3.1-Makefile.patch \
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"${FILESDIR}"/3.1-path.patch \
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"${FILESDIR}"/3.2-fgets.patch
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eprefixify runpsipred*
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emake -C src clean
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}
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src_compile() {
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emake -C src CC=$(tc-getCC)
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}
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src_install() {
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emake -C src DESTDIR="${D}" install
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dobin runpsipred* bin/* BLAST+/runpsipred*
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insinto /usr/share/${PN}
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doins -r data
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dodoc README
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}
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pkg_postinst() {
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elog "Please use the update_blastdb.pl in order to"
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elog "maintain your own local blastdb"
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}
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