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55 lines
1.1 KiB
55 lines
1.1 KiB
# Copyright 1999-2017 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=6
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inherit toolchain-funcs
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MY_HASH="4466924"
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MY_PV="${PV}.${MY_HASH}"
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MY_P="${PN^^}_distribution_Version_${MY_PV}"
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DESCRIPTION="A multiple sequence alignment package"
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HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
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SRC_URI="http://www.tcoffee.org/Packages/Beta/Latest/${MY_P}.tar.gz"
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LICENSE="GPL-2"
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SLOT="0"
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KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
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RDEPEND="
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sci-biology/clustalw
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sci-chemistry/tm-align"
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DEPEND=""
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S="${WORKDIR}/${MY_P}"
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PATCHES=(
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"${FILESDIR}"/${P}-mayhem.patch
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"${FILESDIR}"/${P}-set_proper_dir_permissions.patch
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"${FILESDIR}"/${P}-cxx11.patch
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"${FILESDIR}"/${P}-gcc7.patch
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)
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src_prepare() {
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default
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sed \
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-e '/@/s:.*;:\t:g' \
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-e '/Linking/s:$(CC):$(CC) $(CFLAGS) $(LDFLAGS):g' \
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-i t_coffee_source/makefile || die
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}
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src_compile() {
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emake \
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V=1 \
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CC="$(tc-getCXX)" \
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CFLAGS="${CXXFLAGS} -Wno-write-strings -Wno-unused-result" \
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-C t_coffee_source t_coffee
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}
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src_install() {
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dobin t_coffee_source/t_coffee
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insinto /usr/share/${PN}
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doins -r example
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}
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