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33 lines
919 B
33 lines
919 B
# Copyright 1999-2010 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/bowtie/bowtie-0.12.3.ebuild,v 1.3 2010/07/16 17:22:29 hwoarang Exp $
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EAPI="2"
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DESCRIPTION="An ultrafast memory-efficient short read aligner"
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HOMEPAGE="http://bowtie-bio.sourceforge.net/"
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SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip"
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LICENSE="Artistic"
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SLOT="0"
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IUSE=""
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KEYWORDS="amd64 x86"
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DEPEND="app-arch/unzip"
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RDEPEND=""
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# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de)
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# TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS
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src_prepare() {
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sed -i 's/$(CXX) $(RELEASE_FLAGS)/$(CXX) $(CXXFLAGS) $(RELEASE_FLAGS)/' "${S}/Makefile" || die
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}
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src_install() {
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dobin bowtie bowtie-* || die
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exeinto /usr/share/${PN}/scripts
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doexe scripts/* || die
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newman MANUAL bowtie.1
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dodoc AUTHORS NEWS TUTORIAL
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}
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