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46 lines
920 B
46 lines
920 B
# Copyright 1999-2020 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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DIST_AUTHOR=LDS
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DIST_VERSION=1.43
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inherit perl-module toolchain-funcs multilib
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DESCRIPTION="Read SAM/BAM database files"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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LICENSE="|| ( Apache-2.0 Artistic-2 GPL-1+ )"
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RDEPEND="
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>=sci-biology/bioperl-1.6.9
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sci-biology/samtools:0.1-legacy=
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"
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DEPEND="
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dev-perl/Module-Build
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sci-biology/samtools:0.1-legacy=
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"
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BDEPEND="${RDEPEND}
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virtual/perl-ExtUtils-CBuilder
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>=dev-perl/Module-Build-0.420.0
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"
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PATCHES=(
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"${FILESDIR}"/${PN}-1.430.0-legacy-r1.patch
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)
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src_configure() {
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tc-export CC
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unset LD
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if [[ -n "${CCLD}" ]]; then
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export LD="${CCLD}"
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fi
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SAM_LIB="${EPREFIX}/usr/$(get_libdir)/libbam-0.1-legacy.so" \
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SAM_INCLUDE="${EPREFIX}/usr/include/bam-0.1-legacy" \
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perl-module_src_configure
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}
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src_compile() {
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./Build --config optimize="${CFLAGS}" build || die
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}
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