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49 lines
1.0 KiB
49 lines
1.0 KiB
# Copyright 1999-2012 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/mothur/mothur-1.27.0.ebuild,v 1.1 2012/08/14 15:37:59 jlec Exp $
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EAPI=4
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inherit eutils toolchain-funcs flag-o-matic
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DESCRIPTION="A suite of algorithms for ecological bioinformatics"
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HOMEPAGE="http://www.mothur.org/"
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SRC_URI="http://www.mothur.org/w/images/c/cb/Mothur.${PV}.zip -> ${P}.zip"
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LICENSE="GPL-3"
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SLOT="0"
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IUSE="mpi +readline"
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KEYWORDS="~amd64 ~x86"
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RDEPEND="
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sci-biology/uchime
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mpi? ( virtual/mpi )"
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DEPEND="${RDEPEND}
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app-arch/unzip"
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S=${WORKDIR}/Mothur.source
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pkg_setup() {
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use mpi && export CXX=mpicxx || export CXX=$(tc-getCXX)
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use amd64 && append-flags -DBIT_VERSION
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tc-export FC
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}
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src_prepare() {
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epatch \
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"${FILESDIR}"/${P}-makefile.patch \
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"${FILESDIR}"/${P}-overflows.patch
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}
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use_yn() {
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use $1 && echo "yes" || echo "no"
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}
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src_compile() {
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emake USEMPI=$(use_yn mpi) USEREADLINE=$(use_yn readline)
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}
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src_install() {
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dobin ${PN}
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}
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