43 lines
1.3 KiB
Bash
43 lines
1.3 KiB
Bash
# Copyright 1999-2011 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.2.5.ebuild,v 1.2 2011/06/21 06:38:10 jlec Exp $
|
|
|
|
EAPI=2
|
|
|
|
inherit toolchain-funcs
|
|
|
|
DESCRIPTION="A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees"
|
|
HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html"
|
|
SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2"
|
|
|
|
SLOT="0"
|
|
LICENSE="GPL-2"
|
|
KEYWORDS="~amd64 ~x86"
|
|
IUSE="+threads"
|
|
|
|
# mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS
|
|
DEPEND="" # mpi? ( virtual/mpi )"
|
|
RDEPEND="${DEPEND}"
|
|
|
|
S="${WORKDIR}/RAxML-${PV}"
|
|
|
|
src_prepare() {
|
|
sed \
|
|
-e 's/CFLAGS =/CFLAGS := ${CFLAGS}/' \
|
|
-e 's/CC = gcc/CC = '$(tc-getCC)'/' \
|
|
-i Makefile.* || die
|
|
}
|
|
|
|
src_compile() {
|
|
emake -f Makefile.gcc || die
|
|
emake -f Makefile.SSE3.gcc clean && emake -f Makefile.SSE3.gcc || die
|
|
if use threads; then
|
|
emake -f Makefile.PTHREADS.gcc clean && emake -f Makefile.PTHREADS.gcc || die
|
|
emake -f Makefile.SSE3.PTHREADS.gcc clean && emake -f Makefile.SSE3.PTHREADS.gcc || die
|
|
fi
|
|
}
|
|
|
|
src_install() {
|
|
dobin raxmlHPC raxmlHPC-SSE3 || die
|
|
if use threads; then dobin raxmlHPC-PTHREADS raxmlHPC-PTHREADS-SSE3 || die; fi
|
|
}
|