55 lines
1.4 KiB
Bash
55 lines
1.4 KiB
Bash
# Copyright 1999-2012 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/biopython-1.59.ebuild,v 1.2 2012/12/14 10:00:10 ulm Exp $
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EAPI=3
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PYTHON_DEPEND="2"
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SUPPORT_PYTHON_ABIS="1"
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RESTRICT_PYTHON_ABIS="3.* *-jython"
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inherit distutils eutils
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DESCRIPTION="Python modules for computational molecular biology"
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HOMEPAGE="http://www.biopython.org/ http://pypi.python.org/pypi/biopython/"
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SRC_URI="http://www.biopython.org/DIST/${P}.tar.gz"
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LICENSE="HPND"
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SLOT="0"
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KEYWORDS="~amd64 ~ppc ~x86"
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IUSE="mysql postgres"
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RDEPEND="
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dev-python/numpy
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dev-python/reportlab
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mysql? ( dev-python/mysql-python )
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postgres? ( dev-python/psycopg )"
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DEPEND="${RDEPEND}
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sys-devel/flex"
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PYTHON_CFLAGS=("2.* + -fno-strict-aliasing")
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DISTUTILS_USE_SEPARATE_SOURCE_DIRECTORIES="1"
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DOCS="CONTRIB DEPRECATED NEWS README"
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PYTHON_MODNAME="Bio BioSQL"
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src_prepare() {
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distutils_src_prepare
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epatch "${FILESDIR}/${PN}-1.51-flex.patch"
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}
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src_test() {
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testing() {
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cd Tests
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PYTHONPATH="$(ls -d ../build/lib.*)" "$(PYTHON)" run_tests.py
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}
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python_execute_function --nonfatal -s testing
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}
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src_install() {
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distutils_src_install
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insinto /usr/share/doc/${PF}
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doins -r Doc/* || die "Installation of documentation failed"
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insinto /usr/share/${PN}
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cp -r --preserve=mode Scripts Tests "${ED}usr/share/${PN}" || die "Installation of shared files failed"
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}
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