59 lines
1.3 KiB
Bash
59 lines
1.3 KiB
Bash
# Copyright 1999-2014 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/plink-1.90_pre140514.ebuild,v 1.2 2014/09/22 07:20:31 jlec Exp $
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EAPI=5
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inherit eutils toolchain-funcs
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DESCRIPTION="Whole genome association analysis toolset"
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HOMEPAGE="http://pngu.mgh.harvard.edu/~purcell/plink/"
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SRC_URI="http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> ${P}.zip"
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LICENSE="GPL-2"
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SLOT="0"
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IUSE="blas"
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KEYWORDS="~amd64 ~x86"
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DEPEND="
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app-arch/unzip
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virtual/pkgconfig"
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RDEPEND="
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sys-libs/zlib
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blas? (
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virtual/cblas
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virtual/lapack
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)"
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S="${WORKDIR}/"
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# Package collides with net-misc/putty. Renamed to p-link following discussion with Debian.
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# Package contains bytecode-only jar gPLINK.jar. Ignored, notified upstream.
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src_prepare() {
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use blas || sed -i '/NO_blas =/s/$/1/' "${S}/Makefile" || die
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sed \
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-e 's:zlib-1.2.8/zlib.h:zlib.h:g' \
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-i *.{c,h} || die
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sed \
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-e 's:g++:$(CXX):g' \
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-e 's:gcc:$(CC):g' \
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-e 's:gfortran:$(FC):g' \
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-i Makefile || die
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tc-export PKG_CONFIG
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}
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src_compile() {
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local blas
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emake \
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CXX=$(tc-getCXX) \
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CFLAGS="${CFLAGS}" \
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ZLIB="$($(tc-getPKG_CONFIG) --libs zlib)" \
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BLASFLAGS="$(usex blas "$($(tc-getPKG_CONFIG) --libs lapack cblas)" "")"
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}
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src_install() {
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newbin plink p-link
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}
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