45 lines
1.1 KiB
Bash
45 lines
1.1 KiB
Bash
# Copyright 1999-2015 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.2.6.ebuild,v 1.3 2015/01/29 21:23:13 mgorny Exp $
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EAPI=4
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inherit eutils flag-o-matic toolchain-funcs
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DESCRIPTION="A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees"
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HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html"
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SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2"
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SLOT="0"
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LICENSE="GPL-2"
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KEYWORDS="~amd64 ~x86"
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IUSE="cpu_flags_x86_sse3 +threads"
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# mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS
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DEPEND="" # mpi? ( virtual/mpi )"
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RDEPEND="${DEPEND}"
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S="${WORKDIR}/RAxML-${PV}"
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pkg_pretend() {
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use cpu_flags_x86_sse3 || die "This package needs sse3 support in your CPU"
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}
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src_prepare() {
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epatch "${FILESDIR}"/${P}-makefile.patch
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use cpu_flags_x86_sse3 && append-cflags -D__SIM_SSE3
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use threads && \
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append-cflags -D_USE_PTHREADS && \
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append-ldflags -pthread
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tc-export CC
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}
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src_compile() {
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emake -f Makefile.gcc
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}
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src_install() {
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dobin raxmlHPC
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}
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