45 lines
1.2 KiB
Bash
45 lines
1.2 KiB
Bash
# Copyright 1999-2012 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/plink/plink-1.07-r1.ebuild,v 1.5 2012/07/04 09:31:26 jlec Exp $
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EAPI=4
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inherit eutils toolchain-funcs
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DESCRIPTION="Whole genome association analysis toolset"
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HOMEPAGE="http://pngu.mgh.harvard.edu/~purcell/plink/"
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SRC_URI="http://pngu.mgh.harvard.edu/~purcell/plink/dist/${P}-src.zip"
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LICENSE="GPL-2"
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SLOT="0"
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IUSE="lapack -webcheck R"
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KEYWORDS="amd64 x86"
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DEPEND="app-arch/unzip"
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RDEPEND="
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sys-libs/zlib
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lapack? ( virtual/lapack )"
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S="${WORKDIR}/${P}-src"
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# Package collides with net-misc/putty. Renamed to p-link following discussion with Debian.
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# Package contains bytecode-only jar gPLINK.jar. Ignored, notified upstream.
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src_prepare() {
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epatch \
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"${FILESDIR}"/${PV}-flags.patch \
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"${FILESDIR}"/${P}-gcc47.patch
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use webcheck || sed -i '/WITH_WEBCHECK =/ s/^/#/' "${S}/Makefile" || die
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use R || sed -i '/WITH_R_PLUGINS =/ s/^/#/' "${S}/Makefile" || die
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use lapack || sed -i '/WITH_LAPACK =/ s/^/#/' "${S}/Makefile" || die
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}
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src_compile() {
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emake \
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CXX_UNIX=$(tc-getCXX)
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}
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src_install() {
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newbin plink p-link
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dodoc README.txt
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}
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