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15 lines
1.8 KiB
15 lines
1.8 KiB
DEFINED_PHASES=configure install postinst prepare setup
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DEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2 virtual/pkgconfig sci-biology/seqan:1.4 >=sys-devel/autoconf-archive-2016.09.16 !<sys-devel/gettext-0.18.1.1-r3 || ( >=sys-devel/automake-1.15:1.15 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
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DESCRIPTION=Python-based splice junction mapper for RNA-Seq reads using bowtie2
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EAPI=6
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HOMEPAGE=https://ccb.jhu.edu/software/tophat/
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IUSE=debug python_targets_python2_7
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KEYWORDS=~amd64 ~x86
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LICENSE=Artistic
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RDEPEND=python_targets_python2_7? ( >=dev-lang/python-2.7.5-r2:2.7 ) >=dev-lang/python-exec-2:=[python_targets_python2_7(-)?,-python_single_target_jython2_7(-),-python_single_target_pypy(-),-python_single_target_pypy3(-),-python_single_target_python3_4(-),-python_single_target_python3_5(-),-python_single_target_python3_6(-),python_single_target_python2_7(+)] dev-libs/boost:=[threads] sci-biology/samtools:0.1-legacy sci-biology/bowtie:2
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REQUIRED_USE=python_targets_python2_7
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SLOT=0
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SRC_URI=https://ccb.jhu.edu/software/tophat/downloads/tophat-2.1.1.tar.gz
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_eclasses_=autotools 07e71b3b5690738ef7e8bc097077e00c eutils 708f85bc1bf00876604e223fb56e062a flag-o-matic 35067884fbff37bc0c8e7421c5315558 libtool 84763589a795fb127b537cac01e5359f multilib 165fc17c38d1b11dac2008280dab6e80 python-single-r1 6793fc854691a2320226801400573568 python-utils-r1 50dad5f912d4c16c130f5679777f25e8 toolchain-funcs 1b1da0c45c555989dc5d832b54880783
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_md5_=0182a9a0e1edc7fff427a466a0747e4e
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