56 lines
1.1 KiB
Bash
56 lines
1.1 KiB
Bash
# Copyright 1999-2021 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=6
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inherit java-pkg-opt-2 java-ant-2 toolchain-funcs
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MY_P=${PN}.${PV}
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DESCRIPTION="Protein multiple-alignment-based sequence annealing"
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HOMEPAGE="https://wiki.gentoo.org/wiki/No_homepage"
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SRC_URI="http://baboon.math.berkeley.edu/${PN}/download/${MY_P}.tar.gz"
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LICENSE="GPL-2"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE="java"
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RDEPEND="java? ( >=virtual/jre-1.8:* )"
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DEPEND="java? ( >=virtual/jdk-1.8:* )"
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S=${WORKDIR}/${PN}-align
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PATCHES=(
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"${FILESDIR}"/${P}-makefile.patch
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"${FILESDIR}"/${P}-includes.patch
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)
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src_prepare() {
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default
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java-pkg-opt-2_src_prepare
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}
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src_compile() {
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emake -C align CXX="$(tc-getCXX)" OPT_CXXFLAGS="${CXXFLAGS}"
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if use java; then
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pushd display >/dev/null || die
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eant -Ddisplay all || die
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popd >/dev/null || die
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fi
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}
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src_install() {
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dobin align/${PN}
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dodoc align/{README,PROBCONS.README}
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insinto /usr/share/${PN}/examples
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doins -r examples/.
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if use java; then
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java-pkg_newjar display/AmapDisplay.jar amapdisplay.jar
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java-pkg_dolauncher amapdisplay --jar amapdisplay.jar
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fi
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}
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