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51 lines
1.2 KiB
51 lines
1.2 KiB
# Copyright 1999-2010 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/glimmer/glimmer-3.02-r1.ebuild,v 1.4 2010/01/03 14:17:04 pacho Exp $
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EAPI="2"
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inherit eutils
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MY_PV=${PV//./}
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DESCRIPTION="An HMM-based microbial gene finding system from TIGR"
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HOMEPAGE="http://www.cbcb.umd.edu/software/glimmer/"
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SRC_URI="http://www.cbcb.umd.edu/software/${PN}/${PN}${MY_PV}.tar.gz"
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LICENSE="Artistic"
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SLOT="0"
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IUSE=""
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KEYWORDS="amd64 x86"
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DEPEND=""
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RDEPEND="app-shells/tcsh
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!app-crypt/pkcrack
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!media-libs/libextractor"
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S="${WORKDIR}/${PN}${PV}"
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src_prepare() {
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sed -i -e 's|\(set awkpath =\).*|\1 /usr/share/'${PN}'/scripts|' \
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-e 's|\(set glimmerpath =\).*|\1 /usr/bin|' scripts/* || die "failed to rewrite paths"
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# Fix Makefile to die on failure
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sed -i 's/$(MAKE) $(TGT)/$(MAKE) $(TGT) || exit 1/' src/c_make.gen || die
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# GCC 4.3 include fix
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sed -i 's/include <string>/include <string.h>/' src/Common/delcher.hh || die
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epatch "${FILESDIR}/${PN}-${PV}-glibc210.patch"
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}
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src_compile() {
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emake -C src || die
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}
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src_install() {
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rm bin/test
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dobin bin/* || die
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dodir /usr/share/${PN}/scripts
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insinto /usr/share/${PN}/scripts
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doins scripts/* || die
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dodoc glim302notes.pdf
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}
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