You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
78 lines
2.0 KiB
78 lines
2.0 KiB
# Copyright 1999-2016 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
|
|
EAPI=4
|
|
|
|
inherit eutils toolchain-funcs
|
|
|
|
DESCRIPTION="Tools for DNA/RNA sequence database handling and phylogenetic analysis"
|
|
HOMEPAGE="http://www.arb-home.de/"
|
|
SRC_URI="
|
|
http://download.arb-home.de/release/arb_${PV}/arbsrc.tgz -> ${P}.tgz
|
|
https://dev.gentoo.org/~jlec/distfiles/${P}-linker.patch.xz"
|
|
|
|
SLOT="0"
|
|
LICENSE="arb"
|
|
IUSE="+opengl"
|
|
KEYWORDS="~amd64 ~x86"
|
|
|
|
CDEPEND="app-text/sablotron
|
|
media-libs/libpng
|
|
media-libs/tiff
|
|
www-client/lynx
|
|
x11-libs/libXaw
|
|
x11-libs/libXpm
|
|
x11-libs/motif:0
|
|
opengl? (
|
|
media-libs/glew
|
|
media-libs/freeglut
|
|
|| (
|
|
media-libs/mesa[motif]
|
|
( media-libs/mesa x11-libs/libGLw ) ) )"
|
|
DEPEND="${CDEPEND}
|
|
sys-process/time"
|
|
RDEPEND="${CDEPEND}
|
|
sci-visualization/gnuplot"
|
|
# Recommended: libmotif3 gv xfig xterm treetool java
|
|
|
|
src_unpack() {
|
|
unpack ${A}
|
|
mv arbsrc* ${P}
|
|
}
|
|
|
|
src_prepare() {
|
|
epatch \
|
|
"${WORKDIR}"/${P}-linker.patch \
|
|
"${FILESDIR}"/5.1-libs.patch \
|
|
"${FILESDIR}"/5.1-bfr-overflow.patch \
|
|
"${FILESDIR}"/5.2-libpng15.patch \
|
|
"${FILESDIR}"/${PN}-5.2-gcc-47.patch
|
|
sed \
|
|
-e 's/all: checks/all:/' \
|
|
-e "s/GCC:=.*/GCC=$(tc-getCC) ${CFLAGS}/" \
|
|
-e "s/GPP:=.*/GPP=$(tc-getCXX) ${CXXFLAGS}/" \
|
|
-i "${S}/Makefile" || die
|
|
cp config.makefile.template config.makefile
|
|
sed -i -e '/^[ \t]*read/ d' -e 's/SHELL_ANS=0/SHELL_ANS=1/' "${S}/arb_install.sh" || die
|
|
use amd64 && sed -i -e 's/ARB_64 := 0/ARB_64 := 1/' config.makefile
|
|
use opengl || sed -i -e 's/OPENGL := 1/OPENGL := 0/' config.makefile
|
|
emake ARBHOME="${S}" links
|
|
}
|
|
|
|
src_compile() {
|
|
emake ARBHOME="${S}" PATH="${PATH}:${S}/bin" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${S}/lib" tarfile
|
|
use amd64 && mv arb.tgz arb.64.gentoo.tgz
|
|
use x86 && mv arb.tgz arb.32.gentoo.tgz
|
|
ln -s arb.*.tgz arb.tgz || die
|
|
}
|
|
|
|
src_install() {
|
|
ARBHOME="${D}/opt/arb" "${S}/arb_install.sh" || die
|
|
cat <<- EOF > "${S}/99${PN}"
|
|
ARBHOME=/opt/arb
|
|
PATH=/opt/arb/bin
|
|
LD_LIBRARY_PATH=/opt/arb/lib
|
|
EOF
|
|
doenvd "${S}/99${PN}"
|
|
}
|