66 lines
1.9 KiB
Bash
66 lines
1.9 KiB
Bash
# Copyright 1999-2010 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
# $Header: /var/cvsroot/gentoo-x86/sci-biology/t-coffee/t-coffee-8.93.ebuild,v 1.1 2010/10/03 11:11:56 jlec Exp $
|
|
|
|
EAPI="2"
|
|
|
|
inherit flag-o-matic toolchain-funcs
|
|
|
|
DESCRIPTION="A multiple sequence alignment package"
|
|
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
|
|
SRC_URI="http://www.tcoffee.org/Packages/T-COFFEE_distribution_Version_${PV}.tar.gz"
|
|
|
|
LICENSE="GPL-2"
|
|
SLOT="0"
|
|
IUSE="examples test"
|
|
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
|
|
|
|
RDEPEND="sci-biology/clustalw"
|
|
DEPEND="${DEPEND}
|
|
test? ( dev-lang/perl )"
|
|
|
|
S="${WORKDIR}/T-COFFEE_distribution_Version_${PV}"
|
|
|
|
die_compile() {
|
|
echo
|
|
eerror "If you experience an internal compiler error (consult the above"
|
|
eerror "messages), try compiling t-coffee using very modest compiler flags."
|
|
eerror "See bug #114745 on the Gentoo Bugzilla for more details."
|
|
die "Compilation failed"
|
|
}
|
|
|
|
src_prepare() {
|
|
epatch "${FILESDIR}"/8.69-flags.patch
|
|
epatch "${FILESDIR}"/8.69-test.patch
|
|
}
|
|
|
|
src_compile() {
|
|
[[ $(gcc-version) == "3.4" ]] && append-flags -fno-unit-at-a-time
|
|
[[ $(gcc-version) == "4.1" ]] && append-flags -fno-unit-at-a-time
|
|
emake \
|
|
CC="$(tc-getCC)" CFLAGS="${CFLAGS}" \
|
|
-C t_coffee_source || die_compile
|
|
}
|
|
|
|
src_test() {
|
|
cd "${TCDIR}"
|
|
perl bin/test.pl || die
|
|
}
|
|
|
|
src_install() {
|
|
dobin t_coffee_source/t_coffee || die "Failed to install program."
|
|
|
|
# insinto /usr/share/${PN}/lib/html
|
|
# doins html/* || die "Failed to install Web interface files."
|
|
|
|
dodoc doc/*.txt || die "Failed to install text documentation."
|
|
dohtml doc/*.htm || die "Failed to install HTML documentation."
|
|
|
|
insinto /usr/share/doc/${PF}
|
|
doins doc/*.doc || die "Failed to install DOC documentation."
|
|
|
|
if use examples; then
|
|
insinto /usr/share/${PN}
|
|
doins -r example || die "Failed to install example files."
|
|
fi
|
|
}
|