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394 lines
13 KiB
394 lines
13 KiB
# ChangeLog for sci-biology/biopython
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# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/biopython/ChangeLog,v 1.85 2015/04/07 14:32:18 jlec Exp $
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29 Mar 2015; Justin Lecher <jlec@gentoo.org> -biopython-1.57.ebuild,
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-biopython-1.64.ebuild, -files/SffIO_broken_padding.patch,
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-files/SffIO_error_in_check_eof.patch, -files/biopython-1.51-flex.patch,
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-files/biopython-1.62-SffIO.patch:
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Drop old
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28 Mar 2015; Agostino Sarubbo <ago@gentoo.org> biopython-1.65.ebuild:
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Stable for ppc, wrt bug #544544
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27 Mar 2015; Agostino Sarubbo <ago@gentoo.org> biopython-1.65.ebuild:
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Stable for x86, wrt bug #544544
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27 Mar 2015; Agostino Sarubbo <ago@gentoo.org> biopython-1.65.ebuild:
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Stable for amd64, wrt bug #544544
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26 Mar 2015; Justin Lecher <jlec@gentoo.org>
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+files/biopython-1.65-test-fix-backport.patch, biopython-1.65.ebuild:
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Backport test fix
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26 Mar 2015; Justin Lecher <jlec@gentoo.org> biopython-1.65.ebuild:
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Add note for embos support, bug #543510
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03 Mar 2015; Justin Lecher <jlec@gentoo.org> -biopython-1.58.ebuild,
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-biopython-1.59.ebuild, -biopython-1.61.ebuild, -biopython-1.62-r1.ebuild,
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-biopython-1.62.ebuild, -biopython-1.63-r1.ebuild, -biopython-1.63.ebuild,
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biopython-1.64.ebuild:
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Drop old
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*biopython-1.65 (03 Mar 2015)
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03 Mar 2015; Justin Lecher <jlec@gentoo.org> +biopython-1.65.ebuild:
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Version Bump; add py3 and pypy support
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*biopython-1.64 (03 Jun 2014)
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03 Jun 2014; Justin Lecher <jlec@gentoo.org> +biopython-1.64.ebuild:
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Version Bump, thanks Martin Mokrejs <mmokrejs@fold.natur.cuni.cz> preparing
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the ebuild
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*biopython-1.63-r1 (07 May 2014)
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07 May 2014; Justin Lecher <jlec@gentoo.org> +biopython-1.63-r1.ebuild,
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+files/SffIO_broken_padding.patch, +files/SffIO_error_in_check_eof.patch:
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Import changes from sci overlay
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*biopython-1.63 (30 Jan 2014)
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30 Jan 2014; Justin Lecher <jlec@gentoo.org> +biopython-1.63.ebuild:
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Version Bump
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*biopython-1.62-r1 (29 Dec 2013)
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29 Dec 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.62-r1.ebuild,
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+files/biopython-1.62-SffIO.patch:
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Add additional patch from Martin Mokrejš
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*biopython-1.62 (17 Sep 2013)
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17 Sep 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.62.ebuild:
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Version Bump
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02 Jul 2013; Justin Lecher <jlec@gentoo.org> biopython-1.61.ebuild:
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Fix deps for python
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06 Jun 2013; Justin Lecher <jlec@gentoo.org> biopython-1.61.ebuild:
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Keyword ~-linux
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*biopython-1.61 (26 Apr 2013)
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26 Apr 2013; Justin Lecher <jlec@gentoo.org> +biopython-1.61.ebuild,
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metadata.xml:
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Version Bump
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14 Dec 2012; Ulrich Müller <ulm@gentoo.org> biopython-1.57.ebuild,
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biopython-1.58.ebuild, biopython-1.59.ebuild:
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Update LICENSE, HPND according to LICENSE file.
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*biopython-1.59 (27 Feb 2012)
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27 Feb 2012; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.59.ebuild:
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Version bump
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26 Dec 2011; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.58.ebuild:
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Version bump
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*biopython-1.58 (26 Dec 2011)
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26 Dec 2011; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.58.ebuild:
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Version bump
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23 Jun 2011; Markos Chandras <hwoarang@gentoo.org> -biopython-1.56.ebuild:
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Remove old ebuilds. Requested by Arfrever
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28 May 2011; Brent Baude <ranger@gentoo.org> biopython-1.57.ebuild:
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Marking biopython-1.57 ppc for bug 365877
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24 May 2011; Markus Meier <maekke@gentoo.org> biopython-1.57.ebuild:
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x86 stable, bug #365877
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06 May 2011; Justin Lecher <jlec@gentoo.org> biopython-1.56.ebuild,
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biopython-1.57.ebuild:
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Cleaned DESCRIPTION
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05 May 2011; Markos Chandras <hwoarang@gentoo.org> biopython-1.57.ebuild:
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Stable on amd64 wrt bug #365877
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*biopython-1.57 (03 Apr 2011)
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03 Apr 2011; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
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+biopython-1.57.ebuild:
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Version bump.
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30 Jan 2011; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
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-biopython-1.55.ebuild:
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Delete.
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30 Jan 2011; Raúl Porcel <armin76@gentoo.org> biopython-1.55.ebuild,
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biopython-1.56.ebuild:
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Drop alpha/sparc keywords
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15 Jan 2011; Pawel Hajdan jr <phajdan.jr@gentoo.org>
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biopython-1.56.ebuild:
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x86 stable wrt bug #351498
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14 Jan 2011; Brent Baude <ranger@gentoo.org> biopython-1.56.ebuild:
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stable ppc, bug 351498
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13 Jan 2011; Markos Chandras <hwoarang@gentoo.org> biopython-1.56.ebuild:
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Stable on amd64 wrt bug #351498
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06 Jan 2011; Brent Baude <ranger@gentoo.org> biopython-1.55.ebuild:
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Marking biopython-1.55 ppc for bug 341519
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*biopython-1.56 (13 Dec 2010)
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13 Dec 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
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-biopython-1.53.ebuild, -biopython-1.54.ebuild, +biopython-1.56.ebuild:
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Version bump.
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31 Oct 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.55.ebuild:
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alpha/sparc stable wrt #341519
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21 Oct 2010; Thomas Kahle <tomka@gentoo.org> biopython-1.55.ebuild:
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x86 stable per bug 341519
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19 Oct 2010; Markos Chandras <hwoarang@gentoo.org> biopython-1.55.ebuild:
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Stable on amd64 wrt bug #341519
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15 Oct 2010; Brent Baude <ranger@gentoo.org> biopython-1.54.ebuild:
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stable ppc, bug 327151
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10 Oct 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.54.ebuild:
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sparc stable wrt #327151
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*biopython-1.55 (17 Sep 2010)
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17 Sep 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
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+biopython-1.55.ebuild:
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Version bump.
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12 Sep 2010; Tobias Klausmann <klausman@gentoo.org> biopython-1.54.ebuild:
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Stable on alpha, bug #327151
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12 Jul 2010; Christian Faulhammer <fauli@gentoo.org>
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biopython-1.54.ebuild:
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stable x86, bug 327151
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06 Jul 2010; Markos Chandras <hwoarang@gentoo.org> biopython-1.54.ebuild:
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Stable on amd64 wrt bug #327151
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*biopython-1.54 (05 Jun 2010)
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05 Jun 2010; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
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-biopython-1.49.ebuild, -files/biopython-1.49-flex.patch,
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-biopython-1.51.ebuild, -biopython-1.52.ebuild, +biopython-1.54.ebuild:
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Version bump.
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13 Feb 2010; Raúl Porcel <armin76@gentoo.org> biopython-1.53.ebuild:
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alpha/sparc stable wrt #301964
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07 Feb 2010; Markus Meier <maekke@gentoo.org> biopython-1.53.ebuild:
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amd64/x86 stable, bug #301964
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24 Jan 2010; Brent Baude <ranger@gentoo.org> biopython-1.53.ebuild:
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stable ppc, bug 301964
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*biopython-1.53 (21 Dec 2009)
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21 Dec 2009; Arfrever Frehtes Taifersar Arahesis <arfrever@gentoo.org>
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+biopython-1.53.ebuild:
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Version bump. Set SUPPORT_PYTHON_ABIS.
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31 Oct 2009; Markus Meier <maekke@gentoo.org> biopython-1.52.ebuild:
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amd64/x86 stable, bug #290931
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*biopython-1.52 (23 Sep 2009)
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23 Sep 2009; Andrey Kislyuk <weaver@gentoo.org> +biopython-1.52.ebuild:
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Version bump
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*biopython-1.51 (09 Sep 2009)
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09 Sep 2009; Andrey Kislyuk <weaver@gentoo.org>
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+files/biopython-1.51-flex.patch, +biopython-1.51.ebuild:
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Version bump
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26 Aug 2009; Christian Faulhammer <fauli@gentoo.org> metadata.xml:
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remove now unused flag description
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26 Aug 2009; Christian Faulhammer <fauli@gentoo.org>
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-biopython-1.42.ebuild, -files/biopython-1.43-buildkdtree.patch,
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-biopython-1.44.ebuild, -files/biopython-1.44-sequtils-complement.patch,
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-biopython-1.47.ebuild, -files/biopython-1.47-kdtree.patch:
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clean up
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26 Aug 2009; Tobias Klausmann <klausman@gentoo.org> biopython-1.49.ebuild:
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Stable on alpha, bug #277822
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02 Aug 2009; nixnut <nixnut@gentoo.org> biopython-1.49.ebuild:
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ppc stable #277822
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20 Jul 2009; Jeremy Olexa <darkside@gentoo.org> biopython-1.49.ebuild:
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amd64 stable, bug 277822
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17 Jul 2009; Ferris McCormick <fmccor@gentoo.org> biopython-1.49.ebuild:
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Sparc stable --- bug #277822 --- ran tests successfully.
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14 Jul 2009; Christian Faulhammer <fauli@gentoo.org>
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biopython-1.49.ebuild:
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stable x86, bug 277822
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24 Mar 2009; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
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Giving up maintainership of this package.
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*biopython-1.49 (16 Jan 2009)
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16 Jan 2009; Olivier Fisette <ribosome@gentoo.org>
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+files/biopython-1.49-flex.patch, +biopython-1.49.ebuild:
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Version bump. Thanks to Juan Aguado <juantxorena@gmail.com> for his work.
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Fixes bug #248799.
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06 Aug 2008; Ulrich Mueller <ulm@gentoo.org> metadata.xml:
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Add USE flag description to metadata wrt GLEP 56.
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14 Jul 2008; nixnut <nixnut@gentoo.org> biopython-1.44.ebuild:
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Stable on ppc wrt bug 221159
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07 Jul 2008; Raúl Porcel <armin76@gentoo.org> biopython-1.44.ebuild:
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alpha/sparc/x86 stable wrt #221159
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*biopython-1.47 (06 Jul 2008)
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06 Jul 2008; Olivier Fisette <ribosome@gentoo.org>
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+files/biopython-1.47-kdtree.patch, +biopython-1.47.ebuild:
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New version. Better documentation installation. Added scripts and test
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suite. KDTree now enabled by default (requires switching to EAPI 1).
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06 Jul 2008; Olivier Fisette <ribosome@gentoo.org> biopython-1.44.ebuild:
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Stable on amd64.
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30 Jan 2008; Olivier Fisette <ribosome@gentoo.org> biopython-1.42.ebuild,
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biopython-1.44.ebuild:
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Q.A.: Quoted variables.
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30 Jan 2008; Olivier Fisette <ribosome@gentoo.org> -biopython-1.43.ebuild:
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Removed buggy version (see bug #202602).
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*biopython-1.44 (30 Jan 2008)
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30 Jan 2008; Olivier Fisette <ribosome@gentoo.org>
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+files/biopython-1.44-sequtils-complement.patch, +biopython-1.44.ebuild:
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Fixed six_frame_translations function. Thanks to JTRiley
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<justin.t.riley@gmail.com> for his patch. (Fixes bug #202606.)
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*biopython-1.43 (17 May 2007)
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17 May 2007; Olivier Fisette <ribosome@gentoo.org>
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+files/biopython-1.43-buildkdtree.patch, -biopython-1.40b.ebuild,
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+biopython-1.43.ebuild:
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New upstream version. Ebuild clean-up. Pruned old version.
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16 May 2007; Raúl Porcel <armin76@gentoo.org> biopython-1.42.ebuild:
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alpha stable wrt #153774
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05 Nov 2006; Christian Faulhammer <opfer@gentoo.org>
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biopython-1.42.ebuild:
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stabled x86, bug #153774
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03 Nov 2006; <blubb@gentoo.org> biopython-1.42.ebuild:
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stable on amd64
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03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> -biopython-1.41.ebuild:
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Pruned old version.
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02 Nov 2006; nixnut <nixnut@gentoo.org> biopython-1.42.ebuild:
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Stable on ppc wrt bug 153774
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02 Nov 2006; Jason Wever <weeve@gentoo.org> biopython-1.42.ebuild:
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Stable on SPARC wrt bug #153774.
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14 Sep 2006; Olivier Fisette <ribosome@gentoo.org> metadata.xml:
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Taking over maintainership.
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*biopython-1.42 (12 Sep 2006)
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12 Sep 2006; Olivier Fisette <ribosome@gentoo.org> +biopython-1.42.ebuild:
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New upstream version.
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19 Jan 2006; George Shapovalov <george@gentoo.org> +biopython-1.41.ebuild:
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new version, cleaned up install
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30 Aug 2005; Olivier Fisette <ribosome@gentoo.org> -biopython-1.24.ebuild,
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-biopython-1.30.ebuild:
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Removed obsolete versions.
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12 Jun 2005; Bryan Østergaard <kloeri@gentoo.org> biopython-1.40b.ebuild:
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Stable on alpha.
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21 May 2005; Jason Wever <weeve@gentoo.org> biopython-1.40b.ebuild:
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Stable on SPARC.
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13 May 2005; Olivier Fisette <ribosome@gentoo.org> -biopython-1.10.ebuild,
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-biopython-1.21.ebuild, -biopython-1.23.ebuild, biopython-1.40b.ebuild:
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Removed obsolete versions. Added 1.40b to x86.
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*biopython-1.40b (19 Feb 2005)
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19 Feb 2005; Olivier Fisette <ribosome@gentoo.org>
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+biopython-1.40b.ebuild:
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New version. Should fix bug #82498.
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29 Dec 2004; Ciaran McCreesh <ciaranm@gentoo.org> :
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Change encoding to UTF-8 for GLEP 31 compliance
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*biopython-1.23 (23 Dec 2004)
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23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
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+biopython-1.10.ebuild, +biopython-1.21.ebuild, +biopython-1.23.ebuild,
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+biopython-1.24.ebuild, +biopython-1.30.ebuild:
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Moved from app-sci/biopython to sci-biology/biopython.
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13 Dec 2004; Jason Wever <weeve@gentoo.org> biopython-1.24.ebuild:
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Stable on sparc.
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*biopython-1.30 (07 Oct 2004)
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07 Oct 2004; George Shapovalvo <george@gentoo.org> biopython-1.30.ebuild :
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new version (#51833)
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amd64 has problems with KDTree, will try to look into this more later
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05 May 2004; Bryan Østergaard <kloeri@gentoo.org> biopython-1.24.ebuild:
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Stable on alpha.
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03 Apr 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.24.ebuild:
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Marked stable on x86
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*biopython-1.24 (29 Feb 2004)
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29 Feb 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.24.ebuild :
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version bump
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*biopython-1.23 (30 Dec 2003)
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29 Feb 2004; Peter Bienstman <pbienst@gentoo.org> biopython-1.23.ebuild :
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marked stable on x86
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30 Dec 2003; George Shapovalvo <george@gentoo.org> biopython-1.23.ebuild :
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new version, reworked to use distutils. Thanks to
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Peter Bienstman <Peter.Bienstman@rug.ac.be> for an update (#35727)
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02 Sep 2003; Alastair Tse <liquidx@gentoo.org> biopython-1.10.ebuild,
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biopython-1.21.ebuild:
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moved dev-python/Numeric to dev-python/numeric
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*biopython-1.21 (08 Aug 2003)
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08 Aug 2003; George Shapovalov <george@gentoo.org> biopython-1.21.ebuild :
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new version, added few docs (#25428)
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thanks to Daniel Jaeggi <daniel@jaeggi.co.uk> for notification
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04 Jul 2003; Alastair Tse <liquidx@gentoo.org> biopython-1.10.ebuild:
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renamed reportlab dep
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*biopython-1.10 (18 Feb 2003)
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18 Feb 2003; George Shapovalov <george@gentoo.org> ChangeLog, biopython-1.10.ebuild, files/digest-biopython-1.10 :
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initial release (#11617)
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Biopython - python module for Computational Moelcular Biology
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ebuild submitted by Daniel Jaeggi <daniel@jaeggi.co.uk>
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