39 lines
751 B
Bash
39 lines
751 B
Bash
# Copyright 1999-2020 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=7
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inherit toolchain-funcs
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DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
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HOMEPAGE="https://github.com/lh3/bwa/"
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SRC_URI="https://github.com/lh3/bwa/archive/v${PV}.tar.gz -> ${P}.tar.gz"
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LICENSE="GPL-3"
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SLOT="0"
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KEYWORDS="~amd64 ~x86 ~x64-macos"
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DEPEND="sys-libs/zlib"
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RDEPEND="
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${DEPEND}
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dev-lang/perl"
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PATCHES=(
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"${FILESDIR}"/${PN}-0.7.17-Makefile.patch
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"${FILESDIR}"/${PN}-0.7.17-gcc-10.patch
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)
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DOCS=( NEWS.md README-alt.md README.md )
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src_configure() {
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tc-export CC AR
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}
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src_install() {
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dobin bwa
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exeinto /usr/libexec/${PN}
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doexe qualfa2fq.pl xa2multi.pl
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einstalldocs
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doman bwa.1
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}
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