You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
59 lines
1.5 KiB
59 lines
1.5 KiB
# Copyright 1999-2013 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
|
|
EAPI=5
|
|
|
|
MY_PV=${PV//\./-}
|
|
|
|
DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA"
|
|
HOMEPAGE="http://repeatmasker.org/"
|
|
SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz"
|
|
|
|
LICENSE="OSL-2.1"
|
|
SLOT="0"
|
|
KEYWORDS="~amd64 ~x86"
|
|
IUSE=""
|
|
|
|
DEPEND=""
|
|
RDEPEND="
|
|
sci-biology/rmblast
|
|
sci-biology/trf
|
|
sci-biology/repeatmasker-libraries"
|
|
|
|
S="${WORKDIR}/RepeatMasker"
|
|
|
|
src_configure() {
|
|
sed -i -e 's/system( "clear" );//' \
|
|
-e 's|> \($rmLocation/Libraries/RepeatMasker.lib\)|> '${D}'/\1|' "${S}/configure" || die
|
|
echo "
|
|
env
|
|
/usr/share/${PN}
|
|
/usr/bin
|
|
2
|
|
/opt/rmblast/bin
|
|
Y
|
|
5" | "${S}/configure" || die "configure failed"
|
|
sed -i -e 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' \
|
|
-e 's|".*\(taxonomy.dat\)"|"/usr/share/'${PN}'/\1"|' \
|
|
-e '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' \
|
|
"${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die
|
|
}
|
|
|
|
src_install() {
|
|
exeinto /usr/share/${PN}
|
|
for i in DateRepeats ProcessRepeats RepeatMasker DupMasker RepeatProteinMask; do
|
|
doexe $i || die
|
|
dosym /usr/share/${PN}/$i /usr/bin/$i || die
|
|
done
|
|
|
|
dodir /usr/share/${PN}/lib
|
|
insinto /usr/share/${PN}/lib
|
|
doins "${S}"/*.pm || die
|
|
|
|
insinto /usr/share/${PN}
|
|
doins -r util Matrices Libraries taxonomy.dat *.help || die
|
|
keepdir /usr/share/${PN}/Libraries
|
|
|
|
dodoc README INSTALL *.help
|
|
}
|