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36 lines
870 B
36 lines
870 B
# Copyright 1999-2011 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/bwa/bwa-0.6.1.ebuild,v 1.1 2011/11/30 08:44:21 weaver Exp $
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EAPI=2
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inherit flag-o-matic toolchain-funcs
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DESCRIPTION="Burrows-Wheeler Alignment Tool, a fast short genomic sequence aligner"
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HOMEPAGE="http://bio-bwa.sourceforge.net/"
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SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2"
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LICENSE="GPL-3"
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SLOT="0"
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IUSE=""
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KEYWORDS="~amd64 ~x86 ~x64-macos"
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src_prepare() {
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sed -e "s/\$(CC) \$(CFLAGS)/\$(CC) \$(LDFLAGS) \$(CFLAGS)/" \
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-i "${S}"/Makefile || die #336348
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append-flags -pthread
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}
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src_compile() {
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emake -e CC="$(tc-getCC)" || die
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}
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src_install() {
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dobin bwa || die
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doman bwa.1 || die
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exeinto /usr/share/${PN}
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doexe solid2fastq.pl || die
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doexe qualfa2fq.pl || die
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dodoc ChangeLog NEWS || die
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}
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