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63 lines
1.3 KiB
63 lines
1.3 KiB
# Copyright 1999-2016 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=6
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inherit toolchain-funcs
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DESCRIPTION="Popular short read aligner for Next-generation sequencing data"
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HOMEPAGE="http://bowtie-bio.sourceforge.net/bowtie2/"
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SRC_URI="mirror://sourceforge/project/${PN}-bio/${PN}2/${PV}/${PN}2-${PV}-source.zip"
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LICENSE="GPL-3"
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SLOT="2"
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KEYWORDS="~amd64 ~x86"
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IUSE="examples cpu_flags_x86_sse2 +tbb"
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RDEPEND="dev-lang/perl
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tbb? ( dev-cpp/tbb )"
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DEPEND="${RDEPEND}
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app-arch/unzip"
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S="${WORKDIR}/${PN}2-${PV}"
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DOCS=( AUTHORS NEWS TUTORIAL )
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HTML_DOCS=( doc/{manual.html,style.css} )
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PATCHES=( "${FILESDIR}/${PN}-2.2.9-fix-c++14.patch" )
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pkg_pretend() {
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if ! use cpu_flags_x86_sse2 ; then
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eerror "This package requires a CPU supporting the SSE2 instruction set."
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die "SSE2 support missing"
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fi
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}
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src_compile() {
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emake \
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CC="$(tc-getCC)" \
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CPP="$(tc-getCXX)" \
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CXX="$(tc-getCXX)" \
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CFLAGS="" \
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CXXFLAGS="" \
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EXTRA_FLAGS="${LDFLAGS}" \
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RELEASE_FLAGS="${CXXFLAGS} -msse2" \
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WITH_TBB="$(usex tbb 1 0)"
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}
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src_install() {
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dobin ${PN}2 ${PN}2-*
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exeinto /usr/libexec/${PN}2
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doexe scripts/*
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newman MANUAL ${PN}2.1
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einstalldocs
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if use examples; then
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insinto /usr/share/${PN}2
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doins -r example
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fi
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}
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