50 lines
1.1 KiB
Bash
50 lines
1.1 KiB
Bash
# Copyright 1999-2011 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI="2"
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inherit eutils toolchain-funcs java-pkg-opt-2 java-ant-2
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MY_P=${PN}.${PV}
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DESCRIPTION="Protein multiple-alignment-based sequence annealing"
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HOMEPAGE="http://bio.math.berkeley.edu/amap/"
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SRC_URI="http://baboon.math.berkeley.edu/${PN}/download/${MY_P}.tar.gz"
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LICENSE="GPL-2"
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SLOT="0"
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KEYWORDS="~amd64 ~x86"
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IUSE="java"
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RDEPEND="java? ( >=virtual/jre-1.5 )"
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DEPEND="java? ( >=virtual/jdk-1.5 )"
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S=${WORKDIR}/${PN}-align
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src_prepare() {
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epatch "${FILESDIR}"/${P}-makefile.patch \
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"${FILESDIR}"/${P}-includes.patch
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}
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src_compile() {
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emake -C align CXX="$(tc-getCXX)" \
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OPT_CXXFLAGS="${CXXFLAGS}" || die "make failed"
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if use java; then
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pushd "${S}"/display
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eant -Ddisplay all || die
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popd
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fi
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}
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src_install() {
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dobin align/${PN} || die
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dodoc align/{README,PROBCONS.README} || die
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insinto /usr/share/${PN}/examples
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doins examples/* || die
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if use java; then
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java-pkg_newjar "${S}"/display/AmapDisplay.jar amapdisplay.jar
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java-pkg_dolauncher amapdisplay --jar amapdisplay.jar
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fi
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}
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