You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
25 lines
1.3 KiB
25 lines
1.3 KiB
<?xml version="1.0" encoding="UTF-8"?>
|
|
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
|
|
<pkgmetadata>
|
|
<maintainer type="project">
|
|
<email>sci-chemistry@gentoo.org</email>
|
|
<name>Gentoo Chemistry Project</name>
|
|
</maintainer>
|
|
<longdescription>
|
|
TM-align is a computer algorithm for protein structure alignment using dynamic
|
|
programming and TM-score rotation matrix. An optimal alignment between two
|
|
proteins, as well as the TM-score, will be reported for each comparison. The
|
|
value of TM-score lies in (0,1]. In general, a comparison of TM-score smaller
|
|
0.2 indicates that there is no similarity between two structures; a TM-score
|
|
greater 0.5 means the structures share the same fold.
|
|
|
|
What is the difference between TM-score and TM-align? The TM-score program
|
|
is to compare two models based on their given and known residue equivalency.
|
|
It is usually NOT applied to compare two proteins of different sequences. The
|
|
TM-align is a structural alignment program for comparing two proteins whose
|
|
sequences can be different. The TM-align will first find the best equivalent
|
|
residues of two proteins based on the structure similarity and then output a
|
|
TM-score. The TM-score values in both programs have the same definition.
|
|
</longdescription>
|
|
</pkgmetadata>
|