71 lines
1.9 KiB
Bash
71 lines
1.9 KiB
Bash
# Copyright 1999-2016 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Id$
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EAPI=6
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PYTHON_COMPAT=( python2_7 )
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inherit cmake-utils python-single-r1
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DESCRIPTION="C++ Sequence Analysis Library"
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HOMEPAGE="http://www.seqan.de/"
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SRC_URI="http://packages.${PN}.de/${PN}-src/${PN}-src-${PV}.tar.gz"
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SLOT="$(get_version_component_range 1-2)"
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LICENSE="BSD GPL-3"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
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IUSE="cpu_flags_x86_sse4_1 test"
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DEPEND="sys-libs/zlib
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app-arch/bzip2
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test? ( dev-python/nose[${PYTHON_USEDEP}] )"
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REQUIRED_USE="${PYTHON_REQUIRED_USE} cpu_flags_x86_sse4_1"
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#S="${WORKDIR}"/${PN}-${PN}-v${PV}
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PATCHES=(
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"${FILESDIR}/${P}-shared.patch"
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"${FILESDIR}/${P}-include.patch"
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"${FILESDIR}/${P}-buildsystem.patch"
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)
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src_prepare() {
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# pkg-config file, taken from seqan 2.1
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cp "${FILESDIR}"/${PN}.pc.in ${PN}-${SLOT}.pc || die
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sed -e "s#@CMAKE_INSTALL_PREFIX@#${EPREFIX}/usr#" \
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-e "s#includedir=\${prefix}/include#includedir=\${prefix}/include/${PN}-${SLOT}#" \
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-e "s#@CMAKE_PROJECT_NAME@#${PN}#" \
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-e "s#@SEQAN_VERSION_STRING@#${PV}#" \
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-i ${PN}-${SLOT}.pc || die
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rm -f util/cmake/FindZLIB.cmake || die
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cmake-utils_src_prepare
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}
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src_configure() {
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local mycmakeargs=(
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-DBoost_NO_BOOST_CMAKE=ON
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-DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY
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-DSEQAN_NO_DOX=ON
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)
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cmake-utils_src_configure
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}
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src_install() {
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cmake-utils_src_install
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# SLOT header such that different seqan versions can be used in parallel
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mkdir "${ED}"/usr/include/${PN}-${SLOT} || die
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mv "${ED}"/usr/include/{${PN},${PN}-${SLOT}/} || die
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# pkg-config file
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insinto /usr/share/pkgconfig/
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doins ${PN}-${SLOT}.pc
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}
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pkg_postinst() {
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einfo "${CATEGORY}/${PF} is only intended as support library for older"
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einfo "bioinformatics tools relying on the SeqAn 1.* API. Please develop"
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einfo "any new software against the latest SeqAn release and not this one."
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}
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