47 lines
914 B
Bash
47 lines
914 B
Bash
# Copyright 1999-2017 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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EAPI=6
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inherit autotools
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DESCRIPTION="Algorithm for detecting SNPs, indels, and other polymorphisms"
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HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/"
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SRC_URI="
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ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/${P}.tar.gz
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ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc"
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LICENSE="Whitehead-MIT"
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SLOT="0"
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KEYWORDS="amd64"
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IUSE="openmp"
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RDEPEND="
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!sci-biology/allpaths
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!sci-biology/allpathslg"
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DEPEND="
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${RDEPEND}
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dev-libs/boost"
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DOCS=( "${DISTDIR}/VAAL_manual.doc" )
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PATCHES=(
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"${FILESDIR}/${P}_remove-namespace-std.patch"
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)
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src_prepare() {
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sed \
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-e '/COPYING/d' \
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-i src/Makefile.am || die
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sed \
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-e 's:-ggdb::g' \
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-e '/AC_OPENMP_CEHCK/d' \
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-i configure.ac || die
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default
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eautoreconf
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}
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src_configure() {
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econf \
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$(use_enable openmp)
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}
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