73 lines
1.9 KiB
Bash
73 lines
1.9 KiB
Bash
# Copyright 1999-2015 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
# $Id$
|
|
|
|
# TODO:
|
|
# -Fix javadoc generation OutOfMemoryError
|
|
# -Add launchers for 2 apps in biojava-apps.jar
|
|
# -Decide on demo packaging. (Whether to install its jar as done or sources by examples USE flag)
|
|
|
|
EAPI=2
|
|
|
|
#JAVA_PKG_IUSE="doc source test"
|
|
JAVA_PKG_IUSE="source test"
|
|
|
|
inherit eutils java-pkg-2 java-ant-2
|
|
|
|
DESCRIPTION="A Java framework for processing biological data"
|
|
HOMEPAGE="http://biojava.org"
|
|
SRC_URI="http://www.biojava.org/download/bj17/all/${P}-all.jar"
|
|
LICENSE="LGPL-2.1"
|
|
SLOT="0"
|
|
KEYWORDS="~amd64 ~x86"
|
|
IUSE=""
|
|
|
|
COMMON_DEPEND="dev-java/jgrapht:0
|
|
dev-java/commons-cli:1
|
|
dev-java/commons-dbcp:0
|
|
dev-java/commons-pool:0
|
|
dev-java/commons-collections:0
|
|
dev-java/bytecode:0"
|
|
|
|
RDEPEND=">=virtual/jre-1.5
|
|
${COMMON_DEPEND}"
|
|
DEPEND=">=virtual/jdk-1.5
|
|
app-arch/unzip
|
|
${COMMON_DEPEND}
|
|
test?
|
|
(
|
|
dev-java/junit:4
|
|
dev-java/ant-junit4
|
|
)"
|
|
|
|
S="${WORKDIR}/biojava-${PV}"
|
|
|
|
JAVA_ANT_IGNORE_SYSTEM_CLASSES="true"
|
|
|
|
src_prepare() {
|
|
einfo "Removing bundled jars..."
|
|
find . -name "*.jar" -print -delete
|
|
java-pkg_jar-from jgrapht jgrapht.jar jgrapht-jdk1.5.jar
|
|
java-pkg_jar-from commons-cli-1
|
|
java-pkg_jar-from commons-dbcp commons-dbcp.jar commons-dbcp-1.1.jar
|
|
java-pkg_jar-from commons-pool commons-pool.jar commons-pool-1.1.jar
|
|
java-pkg_jar-from bytecode
|
|
}
|
|
|
|
src_compile() {
|
|
#ANT_OPTS="${ANT_OPTS} -Xmx512m"
|
|
eant package-biojava package-biojava package-demos package-apps #$(use_doc javadocs-all)
|
|
}
|
|
|
|
src_install() {
|
|
java-pkg_newjar ant-build/biojava.jar ${PN}.jar
|
|
java-pkg_newjar ant-build/apps.jar ${PN}-apps.jar
|
|
java-pkg_newjar ant-build/demos.jar ${PN}-demos.jar
|
|
#use doc && java-pkg_dojavadoc ant-build/doc/{biojava,apps,demos}
|
|
use source && java-pkg_dosrc {src,apps,demos}/org
|
|
}
|
|
|
|
src_test() {
|
|
java-pkg_jar-from junit-4 junit.jar junit-4.4.jar
|
|
ANT_TASKS="ant-junit4" eant runtests
|
|
}
|