You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
80 lines
1.6 KiB
80 lines
1.6 KiB
# Copyright 1999-2021 Gentoo Authors
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
|
|
EAPI=5
|
|
|
|
inherit eutils flag-o-matic toolchain-funcs
|
|
|
|
DESCRIPTION="FASTA is a DNA and Protein sequence alignment software package"
|
|
HOMEPAGE="https://fasta.bioch.virginia.edu/fasta_www2/fasta_down.shtml"
|
|
SRC_URI="http://faculty.virginia.edu/wrpearson/${PN}/${PN}36/${P}.tar.gz"
|
|
|
|
LICENSE="fasta"
|
|
SLOT="0"
|
|
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos"
|
|
IUSE="debug cpu_flags_x86_sse2 test"
|
|
RESTRICT="!test? ( test )"
|
|
|
|
DEPEND="test? ( app-shells/tcsh )"
|
|
RDEPEND=""
|
|
|
|
src_prepare() {
|
|
CC_ALT=
|
|
CFLAGS_ALT=
|
|
ALT=
|
|
|
|
use debug && append-flags -DDEBUG
|
|
|
|
if [[ $(tc-getCC) == *icc* ]]; then
|
|
CC_ALT=icc
|
|
ALT="${ALT}_icc"
|
|
else
|
|
CC_ALT=$(tc-getCC)
|
|
use x86 && ALT="32"
|
|
use amd64 && ALT="64"
|
|
fi
|
|
|
|
if use cpu_flags_x86_sse2 ; then
|
|
ALT="${ALT}_sse2"
|
|
append-flags -msse2
|
|
[[ $(tc-getCC) == *icc* ]] || append-flags -ffast-math
|
|
fi
|
|
|
|
export CC_ALT="${CC_ALT}"
|
|
export ALT="${ALT}"
|
|
|
|
epatch "${FILESDIR}"/${P}-ldflags.patch
|
|
|
|
sed \
|
|
-e 's:-ffast-math::g' \
|
|
-i make/Makefile* || die
|
|
|
|
}
|
|
|
|
src_compile() {
|
|
cd src || die
|
|
emake -f ../make/Makefile.linux${ALT} CC="${CC_ALT} ${CFLAGS}" HFLAGS="${LDFLAGS} -o" all
|
|
}
|
|
|
|
src_test() {
|
|
cd test || die
|
|
FASTLIBS="../conf" bash test.sh || die
|
|
}
|
|
|
|
src_install() {
|
|
local bin
|
|
dobin bin/*
|
|
|
|
pushd bin > /dev/null || die
|
|
for bin in *36; do
|
|
dosym ${bin} /usr/bin/${bin%36}
|
|
done
|
|
popd
|
|
|
|
insinto /usr/share/${PN}
|
|
doins -r conf/* data seq
|
|
|
|
doman doc/{prss3.1,fasta36.1,fasts3.1,fastf3.1,ps_lav.1,map_db.1}
|
|
dodoc FASTA_LIST README doc/{README.versions,readme*,fasta*,changes*}
|
|
}
|