42 lines
979 B
Bash
42 lines
979 B
Bash
# Copyright 1999-2013 Gentoo Foundation
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# Distributed under the terms of the GNU General Public License v2
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/seqan/seqan-1.3.1-r1.ebuild,v 1.3 2013/07/17 07:09:45 jlec Exp $
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EAPI=5
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PYTHON_COMPAT=( python{2_6,2_7} )
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inherit cmake-utils flag-o-matic python-single-r1
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DESCRIPTION="C++ Sequence Analysis Library"
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HOMEPAGE="http://www.seqan.de/"
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SRC_URI="http://ftp.seqan.de/releases/${P}.zip"
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SLOT="0"
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LICENSE="BSD GPL-3"
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
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IUSE=""
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REQUIRED_USE="${PYTHON_REQUIRED_USE}"
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RDEPEND="${PYTHON_DEPS}
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sci-biology/samtools"
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DEPEND="${RDEPEND}"
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S="${WORKDIR}"/${P}/cmake
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src_prepare() {
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append-cppflags -I"${EPREFIX}/usr/include/bam"
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rm -rf "${S}"/../lib/samtools || die
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sed \
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-e "s:docs:docs/.:g" \
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-e "/DESTINATION/s:seqan:doc/${PF}/html:g" \
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-i CMakeLists.txt || die
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sed \
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-e "/DESTINATION/s:bin):share/${PN}):g" \
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-i apps/CMakeLists.txt || die
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cmake-utils_src_prepare
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}
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