You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
51 lines
1.5 KiB
51 lines
1.5 KiB
# Copyright 1999-2009 Gentoo Foundation
|
|
# Distributed under the terms of the GNU General Public License v2
|
|
# $Header: /var/cvsroot/gentoo-x86/sci-biology/lagan/lagan-2.0-r1.ebuild,v 1.1 2009/07/21 08:12:46 weaver Exp $
|
|
|
|
EAPI="2"
|
|
|
|
inherit eutils
|
|
|
|
MY_P="lagan20"
|
|
|
|
DESCRIPTION="LAGAN, Multi-LAGAN, Shuffle-LAGAN, Supermap: Whole-genome multiple alignment of genomic DNA"
|
|
HOMEPAGE="http://lagan.stanford.edu/lagan_web/index.shtml"
|
|
SRC_URI="http://lagan.stanford.edu/lagan_web/${MY_P}.tar.gz"
|
|
|
|
LICENSE="GPL-2"
|
|
SLOT="0"
|
|
IUSE=""
|
|
KEYWORDS="~amd64 ~x86"
|
|
|
|
DEPEND=""
|
|
RDEPEND=""
|
|
|
|
S="${WORKDIR}/${MY_P}"
|
|
|
|
src_prepare() {
|
|
sed -i "/use Getopt::Long;/ i use lib \"/usr/share/${PN}/lib\";" "${S}/supermap.pl" || die
|
|
# NB: Testing with glibc-2.10 has uncovered a bug in src/utils/Sequence.h where libc getline is erroneously used instead of own getline
|
|
sed -i 's/getline/my_getline/' "${S}"/src/{anchors.c,glocal/io.cpp} || die
|
|
epatch "${FILESDIR}"/${P}-*.patch
|
|
}
|
|
|
|
src_install() {
|
|
dobin lagan.pl slagan.pl mlagan
|
|
rm lagan.pl slagan.pl utils/Utils.pm
|
|
dodir /usr/share/${PN}/lib
|
|
insinto /usr/share/${PN}/lib
|
|
doins Utils.pm
|
|
exeinto /usr/share/${PN}/utils
|
|
doexe utils/*
|
|
exeinto /usr/share/${PN}
|
|
doexe *.pl anchors chaos glocal order prolagan
|
|
insinto /usr/share/${PN}
|
|
doins *.txt
|
|
dosym /usr/share/${PN}/supermap.pl /usr/bin/supermap
|
|
dosym /usr/bin/lagan.pl /usr/bin/lagan
|
|
dosym /usr/bin/slagan.pl /usr/bin/slagan
|
|
echo "LAGAN_DIR=\"/usr/share/${PN}\"" > ${S}/99${PN}
|
|
doenvd "${S}/99${PN}"
|
|
dodoc Readmes/README.*
|
|
}
|